Getting started | Installing RMeDPower2 | Quick tutorial | Load libraries and read input data | Specify design, model and power parameters | Diagnose data and model | Statistical power estimation | Estimate parameters of interest | Input data | Three key classes of RMeDPower2 | RMeDesign S4 class | ProbabilityModel S4 class | PowerParams S4 class | Three key functions of RMeDPower2 | diagnoseDataModel(data, design, model) function | calculatePower(data, design, model, power_param) function | getEstimatesOfInterest(data, design, model) function | Application examples | Plate assays | Website | Session info
Package: RMeDPower2 1.0.2
RMeDPower2: Design and Modeling for Repeated Measures Studies
Provides complete functionality to analyse data from repeated measures experiments with hierarchical or crossed experimental designs. Supports testing modeling assumptions, identifying outlier observations and experimental units, estimating statistical power, and performing sample size calculations. Uses linear mixed effects models via 'lme4' and simulation-based power analysis via 'simr'. Handles both normal and non-normal error distributions including binomial and Poisson families. For more details see Shin et al. (2022) <doi:10.1101/2022.07.18.500490>, Bates et al. (2015) <doi:10.18637/jss.v067.i01>, Green and MacLeod (2016) <doi:10.1111/2041-210X.12504>, Hartig (2024) <doi:10.32614/CRAN.package.DHARMa>, Nieuwenhuis et al. (2012) <doi:10.32614/RJ-2012-011>, Millard (2013) <doi:10.1007/978-1-4614-8456-1> and Kuznetsova et al. (2017) <doi:10.18637/jss.v082.i13>.
Authors:
RMeDPower2_1.0.2.tar.gz
RMeDPower2_1.0.2.zip(r-4.7)RMeDPower2_1.0.2.zip(r-4.6)RMeDPower2_1.0.2.zip(r-4.5)
RMeDPower2_1.0.2.tgz(r-4.6-any)RMeDPower2_1.0.2.tgz(r-4.5-any)
RMeDPower2_1.0.2.tar.gz(r-4.7-any)RMeDPower2_1.0.2.tar.gz(r-4.6-any)
RMeDPower2_1.0.2.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
RMeDPower2/json (API)
| # Install 'RMeDPower2' in R: |
| install.packages('RMeDPower2', repos = c('https://reubenthomas.r-universe.dev', 'https://cloud.r-project.org')) |
Datasets:
- mouse_behavior_MWM_assay_data - Mouse behavior data from a Morris Water Maze assay
- mouse_brain_electro_physiology_data - Mouse brain electrophysiology data
- plate_assay_full_data - Full plate assay dataset
- plate_assay_pilot_data - Pilot plate assay data
- plate_assay_pilot_data_wo_repeats - Pilot plate assay data without repeated measurements
- snRNAseq_cluster_count_data - Single-nucleus RNA-seq cluster-level count data
- snRNAseq_gene_count_data - Single-nucleus RNA-seq gene-level count data
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated from:f2b8bcc506. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | OK | 291 | ||
| source / vignettes | OK | 284 | ||
| linux-release-x86_64 | OK | 268 | ||
| macos-release-arm64 | OK | 188 | ||
| macos-oldrel-arm64 | OK | 234 | ||
| windows-devel | OK | 232 | ||
| windows-release | OK | 224 | ||
| windows-oldrel | OK | 227 | ||
| wasm-release | OK | 148 |
Exports:calculatePowerdiagnoseDataModelgetEstimatesOfInterestreadDesignreadPowerParamsreadProbabilityModel
Dependencies:abindapeaskpassbackportsbase64encbinombootbroombslibcachemcarcarDataclicodetoolscolorspacecommonmarkcowplotcpp11crosstalkcurldata.tableDerivDHARMadigestdoBydoParalleldplyrEnvStatsevaluatefarverfastmapfontawesomeforeachforecastFormulafracdifffsgapgap.datasetsgenericsggplot2ggtextgluegridtextgtablehighrhtmltoolshtmlwidgetshttpuvhttrinfluence.MEisobanditeratorsjpegjquerylibjsonliteknitrlabelinglaterlatticelazyevallifecyclelitedownlme4lmerTestlmtestmagrittrmarkdownMASSMatrixMatrixModelsmemoisemgcvmicrobenchmarkmimeminqamodelrnlmenloptrnnetnortestnumDerivopensslotelpbkrtestpillarpkgconfigplotlyplotrixplyrpngpromisespurrrqgamquantregR6rappdirsrbibutilsRColorBrewerRcppRcppArmadilloRcppEigenRdpackreformulasrlangRLRsimrmarkdownS7sassscalesshinysimrsourcetoolsSparseMstringistringrsurvivalsystibbletidyrtidyselecttimeDatetinytexurcautf8vctrsviridisLitewithrxfunxml2xtableyamlzoo
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| calculatePower | calculatePower |
| diagnoseDataModel | diagnoseDataModel |
| getEstimatesOfInterest | getEstimatesOfInterest |
| Mouse behavior data from a Morris Water Maze assay | mouse_behavior_MWM_assay_data |
| Mouse brain electrophysiology data | mouse_brain_electro_physiology_data |
| Full plate assay dataset | plate_assay_full_data |
| Pilot plate assay data | plate_assay_pilot_data |
| Pilot plate assay data without repeated measurements | plate_assay_pilot_data_wo_repeats |
| PowerParams-class | PowerParams-class |
| ProbabilityModel-class | ProbabilityModel-class |
| readDesign | readDesign |
| readPowerParams | readPowerParams |
| readProbabilityModel | readProbabilityModel |
| RMeDesign-class | RMeDesign-class |
| Single-nucleus RNA-seq cluster-level count data | snRNAseq_cluster_count_data |
| Single-nucleus RNA-seq gene-level count data | snRNAseq_gene_count_data |
